Biotechnology on the MCAT


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What if we told you that your biological system could do much more than coordinate regular functions, such as moving your muscles when needed?

What comes to mind when you think of the term “Biotechnology”? You may think of crazy ideas like gene cloning, modified organisms, or gene therapy. These are all a significant part of biotechnology, but this term also encompasses things such as antibiotics and crop breeding!

Biotechnology refers to the use of an organism or another biological system to create a product in either a lab or real-life setting.

This guide will introduce you to the fascinating world of biotechnology, along with some key terms and definitions you should remember as you prepare for the MCAT

Let’s get started!

Biotechnology on the MCAT: What Do You Need to Know?

Biotechnology is covered in the Biochemistry section of the MCAT

Introductory biochemistry accounts for 25% of the Biological and Biochemical Foundations of Living Systems section (Bio/Biochem) and 25% of the Chemical and Physical Foundations of Biological Systems section (Chem/Phys).

It’s hard to predict the exact number of questions about biotechnology that will appear on the MCAT. However, you can expect it to appear in both the Bio/Biochem and Chem/Phys sections.

MCAT DNA Biotechnology Cheat Sheet

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The central dogma, recombinant DNA and plasmids, and the genetic engineering techniques sorted by what each one does. Four pages.

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Important Sub-Topics – Biotechnology

We cannot stress enough the importance of biotechnology during MCAT prep since this is closely related to DNA and DNA technology, and other important MCAT topics! 

Biotechnology can be complicated, so let’s break it down into important sub-topics you can concentrate on.

I. Biotechnology: Applications of DNA Technology

There are three main types of DNA technology application:

A. Viral Vector Gene Therapy

A viral vector carries the therapeutic gene to a diseased cell to restore function.

Viral Vector Gene Therapy
B. rt-PCR Test

This test begins with a reverse transcriptase which creates complementary DNA (cDNA) from the viral RNA genome sample. This cDNA is then amplified via numerous polymerase chain reactions to determine the viral load.

rt-PCR Test
C. Transgenic and Knockout Mice

This type of DNA technology is used to study the progression of a disease, such as cancer. We can study disease progression by introducing a defective gene or by taking away a functional gene. From here, we can monitor the mice and note the outcomes!

Transgenic and Knockout Mice

For more in-depth content review on applications of DNA technology, check out these detailed lesson notes created by top MCAT scorers. 

II. Biotechnology: Strategies for DNA Multiplication

Although there are many approaches to DNA multiplication, in this guide, we’ll be focusing on the two covered on the MCAT: Polymerase Chain Reaction (PCR) and Gene Cloning.

Strategy for DNA Multiplication

Description

PCR

Similar to DNA replication. Three steps are involved– denaturation, annealing, and elongation.

Gene Cloning

Using a bacterial organism to duplicate DNA. Three steps are involved– gene insertion into vector, vector uptake in bacteria, and bacterial colony growth.

For more in-depth content review on strategies of DNA multiplication, check out these detailed lesson notes created by top MCAT scorers. 

III. Biotechnology: Embryonic Stem Cells

Embryonic stem cells are pluripotent, meaning they can develop into any cell type except extraembryonic cells, such as placental cells. These cells are harvested from the inner cell mass of the blastocyst and are used in many medical applications.

One example is using embryonic stem cells to determine the development of disease. This is achieved in mice by uptaking a foreign disease-causing transgene through the use of embryonic stem cells!

Another type of research utilizing embryonic stem cells and mice is called knockout mice. This occurs when the gene of interest is removed to study gene inactivation on disease progression. 

For more in-depth content review on embryonic stem cells, check out these detailed lesson notes created by top MCAT scorers. 

IV. Biotechnology: Blotting

The most common technique used to identify the presence of a particular protein is blotting. There are various types of blotting, such as the Northern blot, Southern Blot, and Western Blot. Each type of blotting investigates a different molecule, which can be a DNA or RNA sequence or even a protein. 

Different conclusions can be made from different blotting variations! The northern and western blot are good indicators for gene expression, while the southern blot is a good indicator for gene quantity. 

For more in-depth content review on blotting, check out these detailed lesson notes created by top MCAT scorers. 

V. Biotechnology: Safety and Ethics in Research

With research, especially in the field of DNA technology, many ethical dilemmas need to be considered.

The Belmont Report outlines three main principles that must be followed when conducting research:

The Belmont Report Principle

Description

Respect for Persons

Patient autonomy and protection are met first when conducting research studies through informed consent.

Beneficence

Assesses if the study is maximizing the potential benefits while also minimizing possible harm, also known as nonmaleficence.

Justice

Ensures there is equal representation in the research group and that there’s a fair distribution of the benefits and risks.

For more in-depth content review on safety and ethics, check out these detailed lesson notes created by top MCAT scorers. 

VI. Biotechnology: DNA Libraries

DNA libraries refer to the collection of DNA molecules and fragments derived from a cell. There are two main types:

A. Genomic Libraries

These consist of DNA fragments that comprise the whole genome of the cell, including both coding and noncoding DNA sequences.

B. cDNA Libraries

These are derived using mRNA templates, which oppose the central dogma. cDNA libraries are used primarily to determine gene function.

For more in-depth content review on DNA libraries, check out these detailed lesson notes created by top MCAT scorers. 

VII. Biotechnology: Gel Electrophoresis

Gel electrophoresis is a widely utilized lab technique to separate and study mixtures of nucleic acids and proteins. The technique requires a gel-like, porous matrix and an applied electric field on the matrix, where one end is termed the anode (positively charged) and the other termed the cathode (negatively charged).

Gel Electrophoresis

Three main factors determine how fast and far a molecule will travel in the gel – size, charge, and shape. 

Various types of gel electrophoresis techniques exist. They differ in the performed experimental conditions and the characteristic that is exploited for separation:

Type of Gel Electrophoresis

Description

Native PAGE

Most simple technique, the protein is run on the gel in its native form. However, the shape is a known confounding variable.

SDS-PAGE

Detergent is used to denature proteins, making them streamlined and eliminating shape as a confounding variable.

Reducing SDS-PAGE

Specialized version of SDS-PAGE where proteins are completely denatured with a reducing agent.

Isoelectric Focusing

The gel matrix carries a pH gradient; each protein migrates until it reaches the pH equal to its isoelectric point, then stops.

For more in-depth content review on gel electrophoresis, check out these detailed lesson notes created by top MCAT scorers. 

VIII. Biotechnology: Restriction Enzymes

These are enzymes that contain cutting mechanisms. When DNA is cut at recognition sites, the cut DNA can either have overhanging strands, termed sticky ends, or no overhanging strands termed blunt ends.

For more in-depth content review on restriction enzymes, check out these detailed lesson notes created by top MCAT scorers. 

IX. Biotechnology: DNA Sequencing

DNA sequencing is useful to determine the exact sequence of nucleotides, or bases, in a DNA molecule.

Sanger sequencing, a technique developed by Dr. Frederick Sanger, appears on the MCAT. This technique uses dideoxyribonucleotides and polymerase chain reactions in the process. 

There are three main steps in Sanger sequencing:

1. Template strand isolation

Double-stranded DNA is heated to separate strands via the breaking of existing hydrogen bonds.

2. PCR and Chain Termination

The template strand then undergoes amplification via PCR, resulting in many strands of DNA of different lengths.

3. Gel electrophoresis

Gel electrophoresis is then used to differentiate the smallest strand from the largest strand. Determining the 3’ from the 5’ end! 

For more in-depth content review DNA sequencing, check out these detailed lesson notes created by top MCAT scorers. 

Key Terms and Definitions – Biotechnology

Here are some of the more important key terms and definitions to remember for this general guide to biotechnology!

Term

Definition

Hybridization

The ability of DNA and RNA probes to bind with the DNA and RNA sequences, as they contain complementary, Watson-Crick base pairing.

Endonuclease

Cleave within the nucleic acids via hydrolysis.

Palindromic Sequence

These form recognition sites. Palindromic sequences occur when the 5’-3’ sequence on one strand is identical to the 5’-3’ sequence on the complementary, antiparallel strand.

Electrophoresis

The use of an electrical current applied to a gel matrix to separate biological molecules.

Viral Vector

A tool used to deliver genetic material to a cell.

Dideoxyribonucleotides

These nucleotides lack the C3 hydroxyl group. When attached to a growing DNA strand, elongation will terminate as there is no C3 hydroxyl group to catalyze the addition of another nucleotide. This is why they’re also called terminator nucleotides.

Additional FAQs – Biotechnology on the MCAT

What is the difference between an endonuclease and an exonuclease?

Where they cut. An endonuclease cuts WITHIN a nucleic acid chain, while an exonuclease trims nucleotides off the ENDS. Restriction enzymes are endonucleases, which is why they are also called restriction endonucleases.

Is the anode positive or negative in gel electrophoresis?

The anode is the positive end and the cathode is the negative end, the same arrangement as in an electrolytic cell. DNA carries a negative charge from its phosphate backbone, so it always migrates toward the anode. Proteins coated in SDS pick up a uniform negative charge and do the same, which is what lets SDS-PAGE separate them by size alone.

Are all restriction sites palindromic?

For the MCAT, treat recognition sites as palindromic: the 5’ to 3’ sequence on one strand reads identically to the 5’ to 3’ sequence on the complementary strand. That is what AAMC-style questions test.

In the lab a minority of restriction enzymes recognize interrupted or non-palindromic sequences, so a passage that says MOST restriction enzymes rather than ALL is being precise, not setting a trap.

What is the difference between a genomic library and a cDNA library?

A genomic library holds fragments of the entire genome, introns included. A cDNA library is built by running mRNA backwards through reverse transcriptase, so it contains only the exons that were actually expressed.

Two consequences show up constantly in questions: a cDNA fragment is SMALLER than its genomic counterpart, and a cDNA library is specific to the cell type it came from, which makes it a snapshot of gene expression.

What is the difference between reducing and non-reducing SDS-PAGE?

SDS denatures a protein and coats it in negative charge, but it cannot break disulfide bonds. Reducing SDS-PAGE adds a reducing agent such as beta-mercaptoethanol, which reduces those disulfides back to free thiols and lets the subunits fall apart.

So a protein that runs as one band under non-reducing conditions and two smaller bands under reducing conditions is a disulfide-linked multimer. The masses of the smaller bands should add up to the larger one.

Which blotting technique detects DNA, RNA, and protein?

Southern for DNA, northern for RNA, western for protein. The mnemonic SNoW DRoP lines them up in order: Southern, Northern, Western to DNA, RNA, Protein.

Northern and western blots indicate gene EXPRESSION, because RNA and protein only exist if the gene is being transcribed. A southern blot tells you the gene is PRESENT and in what quantity, which is not the same thing as being active.

Additional Reading Links – Study Notes for Biotechnology on the MCAT

For more in-depth content review about biotechnology on the MCAT, check out these detailed lesson notes created by top MCAT scorers!

MCAT DNA Biotechnology Cheat Sheet

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